Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase-1 operon protein hyaf | SAMEA3472110_05461 | Not Available | Positive | 5454150 - 5455007 | 31376.4 |
| cytochrome bd-ii oxidase subunit i | SAMEA3472110_05462 | Not Available | Positive | 5455141 - 5456685 | 57975.3 |
| cytochrome bd-ii oxidase subunit 2 | SAMEA3472110_05463 | Not Available | Positive | 5456697 - 5457833 | 42398.3 |
| periplasmic appa protein | SAMEA3472110_05464 | Not Available | Positive | 5458018 - 5459316 | 47146.6 |
| cryptic autophosphorylating protein tyrosine kinase etk | SAMEA3472110_05465 | Not Available | Negative | 5459436 - 5461616 | 81264.5 |
| phosphotyrosine-protein phosphatase | SAMEA3472110_05466 | Not Available | Negative | 5461636 - 5462082 | 16386.9 |
| polysaccharide export protein | SAMEA3472110_05467 | Not Available | Negative | 5462070 - 5463230 | 42607.2 |
| putative lipoprotein | SAMEA3472110_05468 | Not Available | Negative | 5463255 - 5465351 | 78675.2 |
| group 4 capsule (g4c) polysaccharide, ymcb | SAMEA3472110_05469 | Not Available | Negative | 5465351 - 5466097 | 27355.7 |
| outer membrane lipoprotein | SAMEA3472110_05470 | Not Available | Negative | 5466094 - 5466738 | 24225.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





