Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| replication protein repc | SAMEA3472110_05233 | Not Available | Positive | 5262631 - 5262924 | 10525.9 |
| predicted atp-binding protein involved in virulence | SAMEA3472110_05234 | Not Available | Negative | 5262977 - 5263459 | 17912.2 |
| is1 transposase | SAMEA3472110_05235 | Not Available | Negative | 5263596 - 5263973 | 14915.2 |
| is1 transposase | SAMEA3472110_05236 | Not Available | Negative | 5264018 - 5264293 | 9868.96 |
| heat stable enterotoxin ii stb | SAMEA3472110_05237 | Not Available | Positive | 5264499 - 5264714 | 7619.33 |
| is1 transposase | SAMEA3472110_05238 | Not Available | Negative | 5264881 - 5265156 | 9868.96 |
| heat stable enterotoxin ii stb | SAMEA3472110_05239 | Not Available | Positive | 5265362 - 5265577 | 7619.33 |
| putative transposase | SAMEA3472110_05241 | Not Available | Positive | 5266533 - 5266940 | 15682.9 |
| zinc-binding alcohol dehydrogenase | SAMEA3472110_05242 | Not Available | Positive | 5267002 - 5267373 | 13002.7 |
| truncated transposase | SAMEA3472110_05243 | Not Available | Negative | 5267294 - 5267479 | 6983.27 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





