Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alcohol dehydrogenase | SAMEA3472110_05190 | Not Available | Positive | 5228076 - 5229086 | 35371.6 |
| putative plasmid maintenance protein | SAMEA3472110_05191 | Not Available | Positive | 5229232 - 5229516 | 10401.7 |
| formate dehydrogenase-n subunit gamma | SAMEA3472110_05192 | Not Available | Negative | 5229567 - 5230220 | 25351.9 |
| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit | SAMEA3472110_05193 | Not Available | Negative | 5230213 - 5231097 | 32196.4 |
| inner membrane protein | SAMEA3472110_05195 | Not Available | Positive | 5234446 - 5235270 | 29464.7 |
| outer membrane porin protein | SAMEA3472110_05196 | Not Available | Positive | 5235529 - 5236629 | 40957.3 |
| uncharacterised protein | SAMEA3472110_05199 | Not Available | Negative | 5237692 - 5238018 | 12380.8 |
| plasmid sos inhibition protein a | SAMEA3472110_05200 | Not Available | Negative | 5238018 - 5238737 | 27727.0 |
| plasmid sos inhibition protein b | SAMEA3472110_05201 | Not Available | Negative | 5238734 - 5239168 | 15818.7 |
| parb-like nuclease | SAMEA3472110_05202 | Not Available | Negative | 5239223 - 5241181 | 71279.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





