Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine dipeptidase | SAMEA3472110_05180 | Not Available | Positive | 5218838 - 5219419 | 21242.2 |
| abc transporter substrate-binding protein | SAMEA3472110_05181 | Not Available | Positive | 5219433 - 5220983 | 57702.3 |
| abc transporter permease | SAMEA3472110_05182 | Not Available | Positive | 5220985 - 5222007 | 37398.4 |
| abc transporter permease | SAMEA3472110_05183 | Not Available | Positive | 5222004 - 5222900 | 31990.9 |
| d-ala-d-ala transporter subunit ddpd | SAMEA3472110_05184 | Not Available | Positive | 5222897 - 5223883 | 36076.1 |
| abc transporter atp-binding protein | SAMEA3472110_05185 | Not Available | Positive | 5223876 - 5224802 | 34615.0 |
| peroxiredoxin (osmotically-inducible protein c) | SAMEA3472110_05186 | Not Available | Negative | 5224858 - 5225289 | 15089.0 |
| biofilm-dependent modulation protein | SAMEA3472110_05187 | Not Available | Positive | 5225634 - 5225849 | 7988.24 |
| 30s ribosomal subunit s22 | SAMEA3472110_05188 | Not Available | Positive | 5225951 - 5226088 | 5096.13 |
| malate dehydrogenase | SAMEA3472110_05189 | Not Available | Positive | 5226245 - 5227942 | 63176.0 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





