Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative n-acetylmuramoyl-l-alanine amidase | SAMEA3472110_05125 | Not Available | Negative | 5169053 - 5169883 | 31058.1 |
| conserved protein, upf0145 family | SAMEA3472110_05126 | Not Available | Negative | 5169880 - 5170203 | 11437.7 |
| putative type iii effector protein (pentapeptide repeat protein) | SAMEA3472110_05127 | Not Available | Negative | 5170414 - 5170704 | 11167.5 |
| tonb-dependent receptor | SAMEA3472110_05173 | Not Available | Positive | 5204283 - 5206646 | 88428.4 |
| membrane-associated peptidase | SAMEA3472110_05174 | Not Available | Positive | 5206711 - 5209494 | 104110.0 |
| glutamate decarboxylase beta | SAMEA3472110_05175 | Not Available | Positive | 5209856 - 5211256 | 52671.0 |
| glutamate/gamma-aminobutyrate antiporter (extreme acid sensitivity protein) | SAMEA3472110_05176 | Not Available | Positive | 5211412 - 5212947 | 55064.0 |
| putative lipoprotein | SAMEA3472110_05177 | Not Available | Positive | 5213078 - 5214397 | 49646.9 |
| putative signal transduction protein | SAMEA3472110_05178 | Not Available | Positive | 5214774 - 5216156 | 53172.7 |
| heme-regulated cyclic amp phosphodiesterase (direct oxygen sensor protein) | SAMEA3472110_05179 | Not Available | Positive | 5216181 - 5218580 | 90267.6 |
Pathways
934 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





