Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | SAMEA3472110_05103 | Not Available | Positive | 5137550 - 5137819 | 10216.1 |
| putative helicase | SAMEA3472110_05104 | Not Available | Negative | 5137981 - 5140341 | 88039.5 |
| protein of uncharacterised function (duf3296) | SAMEA3472110_05105 | Not Available | Negative | 5140496 - 5141059 | 22435.9 |
| putative prophage protein | SAMEA3472110_05106 | Not Available | Negative | 5141880 - 5143313 | 54263.1 |
| membrane protein | SAMEA3472110_05107 | Not Available | Positive | 5145364 - 5147181 | 70846.4 |
| integrase | SAMEA3472110_05108 | Not Available | Negative | 5147368 - 5148570 | 45376.7 |
| atp-dependent clp protease atp-binding subunit | SAMEA3472110_05110 | Not Available | Negative | 5149268 - 5151544 | 84211.9 |
| atp-dependent clp protease adaptor protein | SAMEA3472110_05111 | Not Available | Negative | 5151575 - 5151895 | 12179.7 |
| macrolide export atp-binding/permease protein | SAMEA3472110_05113 | Not Available | Negative | 5152514 - 5154460 | 70662.8 |
| macrolide-specific efflux protein | SAMEA3472110_05114 | Not Available | Negative | 5154457 - 5155572 | 40642.3 |
Pathways
934 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





