Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium/proline symporter (proline permease) | SAMEA3472110_05007 | Not Available | Negative | 5035425 - 5036933 | 54338.3 |
| uncharacterised protein | SAMEA3472110_05008 | Not Available | Negative | 5037092 - 5037301 | 7779.91 |
| trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | SAMEA3472110_05009 | Not Available | Positive | 5037356 - 5041318 | 143802.0 |
| transcriptional regulator ycdc | SAMEA3472110_05010 | Not Available | Negative | 5041358 - 5041996 | 23688.9 |
| monooxygenase ycdm | SAMEA3472110_05011 | Not Available | Positive | 5042284 - 5043375 | 39947.4 |
| isochorismatase family protein ycdl | SAMEA3472110_05012 | Not Available | Positive | 5043372 - 5044067 | 25361.3 |
| pyrimidine utilization protein c | SAMEA3472110_05013 | Not Available | Positive | 5044079 - 5044465 | 13763.6 |
| alternative pyrimidine degradation pathway protein | SAMEA3472110_05014 | Not Available | Positive | 5044473 - 5045273 | 28979.8 |
| putative nadh dehydrogenase/nad(p)h nitroreductase (pyrimidine utilization protein e) | SAMEA3472110_05015 | Not Available | Positive | 5045283 - 5045873 | 21580.6 |
| oxidoreductase, flavin:nadh component | SAMEA3472110_05016 | Not Available | Positive | 5045884 - 5046378 | 17739.3 |
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





