Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative rhum-like cytoplasmic protein | SAMEA3472110_04987 | Not Available | Positive | 5013140 - 5013280 | 5331.67 |
| sugar efflux transporter c | SAMEA3472110_04988 | Not Available | Positive | 5013668 - 5014852 | 43480.0 |
| transport protein yicl | SAMEA3472110_04989 | Not Available | Positive | 5014963 - 5015886 | 33107.4 |
| lipoprotein-28 | SAMEA3472110_04990 | Not Available | Negative | 5015890 - 5016708 | 29438.3 |
| putative transport protein | SAMEA3472110_04991 | Not Available | Positive | 5016917 - 5017210 | 11049.3 |
| type iii secretion-associated chaperone | SAMEA3472110_04992 | Not Available | Positive | 5017511 - 5018008 | 19058.6 |
| uncharacterised protein | SAMEA3472110_04993 | Not Available | Positive | 5018018 - 5018200 | 6998.28 |
| putative cell invasion type iii effector protein | SAMEA3472110_04994 | Not Available | Positive | 5018256 - 5019077 | 30994.2 |
| putative cell invasion type iii effector protein | SAMEA3472110_04995 | Not Available | Positive | 5019061 - 5020038 | 34628.7 |
| putative type iii effector protein | SAMEA3472110_04996 | Not Available | Positive | 5020051 - 5021181 | 41705.9 |
Pathways
383 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





