Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i and ii aminotransferase | SAMEA3472110_02939 | Not Available | Negative | 3024453 - 3025706 | 46699.9 |
| alpha-amylase | SAMEA3472110_02940 | Not Available | Negative | 3025884 - 3027914 | 75831.7 |
| putative endo-beta-n-acetylglucosaminidase | SAMEA3472110_02941 | Not Available | Positive | 3028235 - 3029059 | 30869.3 |
| dna-binding transcriptional activator | SAMEA3472110_02942 | Not Available | Negative | 3029167 - 3030345 | 44871.7 |
| xylose transport system permease xylh | SAMEA3472110_02943 | Not Available | Negative | 3030423 - 3031604 | 41091.5 |
| d-xylose transport atp-binding protein xylg | SAMEA3472110_02944 | Not Available | Negative | 3031582 - 3033123 | 56390.8 |
| d-xylose transporter subunit xylf | SAMEA3472110_02945 | Not Available | Negative | 3033201 - 3034193 | 35736.1 |
| d-xylose isomerase | SAMEA3472110_02946 | Not Available | Positive | 3034559 - 3035881 | 49702.6 |
| xylulose kinase | SAMEA3472110_02947 | Not Available | Positive | 3035953 - 3037407 | 52668.3 |
| inner membrane protein | SAMEA3472110_02948 | Not Available | Positive | 3037575 - 3037916 | 12539.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





