Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium transport system atp-binding proteinSAMN06297423_0262Not AvailableNegative320642 - 32137327094.9
abc-type na+ efflux pump, permease componentSAMN06297423_0263Not AvailableNegative321370 - 32262947915.6
histone h1-like proteinSAMN06297423_0264Not AvailablePositive322890 - 32342017675.0
atp-binding cassette, subfamily f, member 3SAMN06297423_0265Not AvailablePositive323525 - 32542971142.0
3-isopropylmalate/(r)-2-methylmalate dehydratase large subunitSAMN06297423_0266Not AvailablePositive325559 - 32683946056.7
3-isopropylmalate/(r)-2-methylmalate dehydratase small subunitSAMN06297423_0267Not AvailablePositive326855 - 32734917857.2
3-isopropylmalate dehydrogenaseSAMN06297423_0268Not AvailablePositive327361 - 32846739786.0
exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphataseSAMN06297423_0269Not AvailablePositive328496 - 33003457719.1
polyphosphate kinaseSAMN06297423_0270Not AvailablePositive330034 - 33244291336.3
abc-2 type transport system atp-binding proteinSAMN06297423_0272Not AvailablePositive332879 - 33359226859.2

Displaying genes 261 – 270 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.