Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
indolepyruvate ferredoxin oxidoreductase alpha subunitSAMN06297423_2582Not AvailablePositive2871019 - 287277363050.2
indolepyruvate ferredoxin oxidoreductase beta subunitSAMN06297423_2583Not AvailablePositive2872767 - 287334220324.7
acyl-coa thioesteraseSAMN06297423_2584Not AvailablePositive2873351 - 287376415067.1
phenylacetate-coa ligaseSAMN06297423_2585Not AvailablePositive2873792 - 287509348626.7
uncharacterized conserved protein, contains tandem act domainsSAMN06297423_2586Not AvailablePositive2875115 - 287553714699.9
hypothetical proteinSAMN06297423_2587Not AvailableNegative2875612 - 287607917358.4
diguanylate cyclase (ggdef) domain-containing proteinSAMN06297423_2588Not AvailablePositive2876275 - 287766652627.9
hypothetical proteinSAMN06297423_2589Not AvailablePositive2877784 - 287867434016.7
general stress protein 26SAMN06297423_2590Not AvailablePositive2878680 - 287915318197.1
nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) familySAMN06297423_2591Not AvailablePositive2879169 - 287975021588.7

Displaying genes 2561 – 2570 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.