Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted dehydrogenaseSAMN06297423_2110Not AvailablePositive2340110 - 234106935459.7
uncharacterized membrane proteinSAMN06297423_2111Not AvailablePositive2341071 - 234159818769.9
16s rrna (guanine1207-n2)-methyltransferaseSAMN06297423_2112Not AvailablePositive2341595 - 234220622628.2
putative abc-transporter type ivSAMN06297423_2113Not AvailablePositive2342203 - 234317437169.4
chromosome partitioning atpase, mrp family, contains fe-s clusterSAMN06297423_2114Not AvailablePositive2343221 - 234406929747.1
thioredoxinSAMN06297423_2115Not AvailablePositive2344159 - 234459016141.1
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseSAMN06297423_2116Not AvailablePositive2344603 - 234509717343.9
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseSAMN06297423_2117Not AvailableNegative2345139 - 234588827382.0
dna repair protein rada/smsSAMN06297423_2118Not AvailableNegative2345904 - 234732250073.6
ll-diaminopimelate aminotransferase apoenzymeSAMN06297423_2119Not AvailableNegative2347442 - 234862343318.2

Displaying genes 2091 – 2100 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.