Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trk system potassium uptake protein trkhSAMN06297423_1999Not AvailableNegative2206006 - 220747553391.8
trk system potassium uptake protein trkaSAMN06297423_2000Not AvailableNegative2207472 - 220884849610.3
cobalamin synthesis protein cobw c-terminal domain-containing proteinSAMN06297423_2001Not AvailableNegative2208854 - 221000843044.6
cobw/hypb/ureg, nucleotide-binding domainSAMN06297423_2002Not AvailableNegative2210032 - 221098235993.4
pp_01945SAMN06297423_2003Not AvailablePositive2211093 - 2212094Not Available
hypothetical proteinSAMN06297423_2004Not AvailablePositive2212087 - 221271922473.4
glycerate dehydrogenaseSAMN06297423_2005Not AvailableNegative2213089 - 221406034904.5
hypothetical proteinSAMN06297423_2006Not AvailablePositive2214162 - 221523238570.6
hypothetical proteinSAMN06297423_2007Not AvailablePositive2215339 - 221637636785.7
abc-type glycerol-3-phosphate transport system, substrate-binding proteinSAMN06297423_2008Not AvailablePositive2216520 - 221792651144.4

Displaying genes 1981 – 1990 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.