Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-deoxy-d-arabinoheptulosonate-7-phosphate synthaseSAMN06297423_1959Not AvailablePositive2166127 - 216712535840.5
prephenate dehydrogenaseSAMN06297423_1960Not AvailablePositive2167198 - 216804031627.0
3-dehydroquinate synthaseSAMN06297423_1961Not AvailablePositive2168037 - 216910438195.4
3-phosphoshikimate 1-carboxyvinyltransferaseSAMN06297423_1962Not AvailablePositive2169101 - 217034545489.0
chorismate synthaseSAMN06297423_1963Not AvailablePositive2170342 - 217143338686.8
shikimate kinaseSAMN06297423_1964Not AvailablePositive2171448 - 217301357912.0
3-dehydroquinate dehydrataseSAMN06297423_1965Not AvailablePositive2173015 - 217344015516.6
zinc-ribbon domain-containing proteinSAMN06297423_1966Not AvailablePositive2173794 - 217487636894.5
hypothetical proteinSAMN06297423_1967Not AvailablePositive2174997 - 217557821311.1
predicted branched-chain amino acid permease (azaleucine resistance)SAMN06297423_1968Not AvailablePositive2175571 - 217673741100.9

Displaying genes 1941 – 1950 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.