Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophanyl-trna synthetaseSAMN06297423_1949Not AvailableNegative2155437 - 215642636685.0
hypothetical proteinSAMN06297423_1950Not AvailablePositive2156508 - 215723626795.5
spore photoproduct lyaseSAMN06297423_1951Not AvailablePositive2157211 - 215818536845.2
nadp-dependent 3-hydroxy acid dehydrogenase ydfgSAMN06297423_1952Not AvailablePositive2158176 - 215887125337.8
pyruvate formate lyase activating enzymeSAMN06297423_1953Not AvailablePositive2159198 - 215989625757.0
ribonucleoside-triphosphate reductase class iii catalytic subunitSAMN06297423_1954Not AvailablePositive2159907 - 216231290618.5
coenzyme pqq synthesis protein d (pqqd)SAMN06297423_1955Not AvailablePositive2162516 - 21627739505.4
hypothetical proteinSAMN06297423_1956Not AvailablePositive2163031 - 21631655269.95
polyphosphate:amp phosphotransferaseSAMN06297423_1957Not AvailablePositive2163522 - 216500959148.6
transcriptional regulator, card familySAMN06297423_1958Not AvailablePositive2165290 - 216581119666.5

Displaying genes 1931 – 1940 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.