Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium/proline symporterSAMN06297423_1678Not AvailablePositive1876018 - 187756555518.7
signal transduction histidine kinaseSAMN06297423_1679Not AvailableNegative1878043 - 187927245582.6
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN06297423_1680Not AvailableNegative1879266 - 187994325324.7
transcriptional regulator, contains xre-family hth domainSAMN06297423_1681Not AvailablePositive1880132 - 188124141863.2
short-chain dehydrogenaseSAMN06297423_1682Not AvailablePositive1881389 - 188211425729.8
hypothetical proteinSAMN06297423_1683Not AvailablePositive1882130 - 188328141144.0
signal peptidase iSAMN06297423_1684Not AvailablePositive1883544 - 188418223465.2
lpxtg-motif cell wall anchor domain-containing proteinSAMN06297423_1685Not AvailablePositive1884254 - 1887565121870.0
lpxtg-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation d2 domain-containing proteinSAMN06297423_1686Not AvailablePositive1887562 - 188936764519.3
sortase aSAMN06297423_1687Not AvailablePositive1889367 - 189021231054.6

Displaying genes 1661 – 1670 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.