Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine transport system atp-binding proteinSAMN06297423_1598Not AvailablePositive1787848 - 178910446821.0
abc-type spermidine/putrescine transport system, permease component iSAMN06297423_1599Not AvailablePositive1789104 - 179053753765.4
spermidine/putrescine transport system permease proteinSAMN06297423_1600Not AvailablePositive1790534 - 179133429162.9
spermidine/putrescine transport system substrate-binding proteinSAMN06297423_1601Not AvailablePositive1791365 - 179247742293.1
hypothetical proteinSAMN06297423_1602Not AvailablePositive1792782 - 179357030927.8
glutamate 5-kinaseSAMN06297423_1603Not AvailableNegative1793633 - 179445129401.1
penicillin-binding protein 1aSAMN06297423_1604Not AvailableNegative1794544 - 179686884708.1
23s rrna (uracil1939-c5)-methyltransferaseSAMN06297423_1605Not AvailablePositive1796969 - 179836351544.8
glycosyltransferase involved in cell wall bisynthesisSAMN06297423_1606Not AvailablePositive1798484 - 179949138681.1
glycosyltransferase involved in cell wall bisynthesisSAMN06297423_1607Not AvailablePositive1799488 - 180033032196.8

Displaying genes 1581 – 1590 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.