Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stress responsive a/b barrel domainSAMN06297423_1568Not AvailablePositive1749851 - 175015311071.3
uncharacterized protein, pyridoxamine 5'-phosphate oxidase (pnpox-like) familySAMN06297423_1569Not AvailablePositive1750186 - 175059315035.0
nad+ diphosphataseSAMN06297423_1570Not AvailablePositive1750711 - 175153531614.7
zinc transport system permease proteinSAMN06297423_1571Not AvailableNegative1751532 - 175236829180.1
zinc transport system atp-binding proteinSAMN06297423_1572Not AvailableNegative1752361 - 175307726368.8
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN06297423_1573Not AvailablePositive1753386 - 175405425289.1
hypothetical proteinSAMN06297423_1574Not AvailablePositive1754070 - 175575564569.4
hypothetical proteinSAMN06297423_1575Not AvailablePositive1755870 - 175651124107.0
hypothetical proteinSAMN06297423_1576Not AvailableNegative1756922 - 175757825073.8
zinc-ribbon domain-containing proteinSAMN06297423_1577Not AvailablePositive1757756 - 175804010162.0

Displaying genes 1551 – 1560 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.