Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseSAMN06297423_1304Not AvailableNegative1489221 - 149067252510.5
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseSAMN06297423_1305Not AvailableNegative1490674 - 149218255489.8
stage v sporulation protein d (sporulation-specific penicillin-binding protein)SAMN06297423_1306Not AvailableNegative1492318 - 149480190856.3
hypothetical proteinSAMN06297423_1307Not AvailableNegative1494779 - 149547426170.9
16s rrna (cytosine1402-n4)-methyltransferaseSAMN06297423_1308Not AvailableNegative1495500 - 149646836295.2
mraz proteinSAMN06297423_1309Not AvailableNegative1496452 - 149688015941.9
sucrose-6-phosphate hydrolaseSAMN06297423_1310Not AvailableNegative1497449 - 149971683371.6
rod shape determining protein rodaSAMN06297423_1311Not AvailableNegative1499732 - 150085640872.5
phosphatidylglycerol:prolipoprotein diacylglycerol transferaseSAMN06297423_1312Not AvailableNegative1500859 - 150174332987.8
riboflavin kinase / fmn adenylyltransferaseSAMN06297423_1313Not AvailableNegative1501841 - 150277334970.0

Displaying genes 1291 – 1300 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.