Ruminococcaceae bacterium strain R-25

Obligate anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium strain R-25 is an obligate anaerobe belonging to the family Ruminococcaceae. This strain has been identified in hosts from the genus Bos, which includes cattle and other bovines. It is characterized by its uncharacterized Gram staining properties, indicating that its specific Gram reaction has not been defined. The genomic structure of R. bacterium strain R-25 includes two replicons, suggesting a complex genetic organization that may contribute to its adaptability in anaerobic environments. The strain is documented in two genetic accessions, UHJI00000000.1 and QGFZ00000000.1, which serve as references for its genomic data. The presence of Ruminococcaceae bacterium strain R-25 in Bos hosts highlights its potential role in the gut microbiome of ruminants. As an obligate anaerobe, it likely participates in the fermentation processes essential for the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its host. This insight underscores the importance of understanding microbial diversity within the gastrointestinal tract of ruminants, as it plays a critical role in nutrient absorption and fermentation, influencing both host health and agricultural productivity.

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium strain R-25 genome assembly, contig:

Gene Summary

Adenine Count

853217 bp

Thymine Count

838844 bp

Guanine Count

696180 bp

Cytosine Count

679320 bp

Genome Length

3067561 bp

Protein-coding Genes

2712 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ssu ribosomal protein s12p methylthiotransferaseSAMN06297423_1064Not AvailableNegative1221885 - 122324950978.2
metallo-beta-lactamase superfamily proteinSAMN06297423_1065Not AvailablePositive1223303 - 122389021952.2
sos response regulatory protein oraa/recx, interacts with recaSAMN06297423_1066Not AvailableNegative1223887 - 122434517074.2
recombination protein recaSAMN06297423_1067Not AvailableNegative1224338 - 122546239974.6
phosphoglycerate dehydrogenaseSAMN06297423_1068Not AvailableNegative1225764 - 122672335152.4
protein of unknown functionSAMN06297423_1069Not AvailableNegative1226720 - 122773938998.6
l,d-peptidoglycan transpeptidase ykud, erfk/ybis/ycfs/ynhg familySAMN06297423_1070Not AvailableNegative1227808 - 122874334064.9
putative peptidoglycan lipid ii flippaseSAMN06297423_1071Not AvailableNegative1228748 - 123037959763.0
nicotinamide-nucleotide amidaseSAMN06297423_1072Not AvailableNegative1230380 - 123088617441.1
dna segregation atpase ftsk/spoiiieSAMN06297423_1073Not AvailableNegative1230879 - 1233878108612.0

Displaying genes 1051 – 1060 of 5520 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.