Yokenella regensburgei strain NCTC11966

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Yokenella

Description

Yokenella regensburgei strain NCTC11966 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number UHJH00000000.1, which serves as a reference for its genetic material in databases. This single-replicon feature may suggest a simplified replication process compared to other bacteria with multiple replicons, potentially impacting its growth and adaptation in various environments. Yokenella regensburgei is part of the Enterobacteriaceae family and is known to be associated with human infections, though its ecological niche and specific pathogenic mechanisms require further study. The presence of a single replicon may allow for efficient regulation of gene expression and replication in response to environmental changes, which can be crucial for survival and competitiveness in diverse habitats. From a biological perspective, the traits of Yokenella regensburgei strain NCTC11966 highlight its potential adaptability in different ecological niches, particularly in environments where resource availability fluctuates. Understanding the genomic structure and characteristics of this strain can provide insights into its role within microbial communities and its interactions with hosts, contributing to a broader comprehension of its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusYokenella
SpeciesYokenella regensburgei
Strainstrain NCTC11966

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Yokenella regensburgei strain NCTC11966
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yokenella regensburgei strain NCTC11966 genome assembly, contig:

Gene Summary

Adenine Count

1113811 bp

Thymine Count

1120385 bp

Guanine Count

1353032 bp

Cytosine Count

1350297 bp

Genome Length

4937525 bp

Protein-coding Genes

4410 genes

Non-Coding Genes

321 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crossover junction endodeoxyribonuclease ruvcNCTC11966_02140Not AvailablePositive2186589 - 218711018757.9
holliday junction atp-dependent dna helicase ruvaNCTC11966_02141Not AvailablePositive2187190 - 218780121987.9
holliday junction atp-dependent dna helicase ruvbNCTC11966_02142Not AvailablePositive2187810 - 218882037196.0
high-affinity zinc uptake system membrane protein znubNCTC11966_02143Not AvailableNegative2188851 - 218963927772.4
zinc import atp-binding protein znucNCTC11966_02144Not AvailableNegative2189636 - 219039127542.9
high-affinity zinc uptake system protein znua precursorNCTC11966_02145Not AvailablePositive2190533 - 219141432402.3
glycyl-glycine endopeptidase lytm precursorNCTC11966_02146Not AvailablePositive2191430 - 219274949047.4
lipid a biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferaseNCTC11966_02147Not AvailablePositive2192868 - 219384237643.9
pyruvate kinase iiNCTC11966_02148Not AvailableNegative2193886 - 219532851428.4
uncharacterized hth-type transcriptional regulator ybbhNCTC11966_02149Not AvailableNegative2195448 - 219638334240.2

Displaying genes 2221 – 2230 of 4731 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.