Yersinia ruckeri strain NCTC10476

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia ruckeri strain NCTC10476 is a rod-shaped bacterium that exhibits the presence of flagella, facilitating motility in aquatic habitats. It is notably associated with salmonid fish, particularly Oncorhynchus mykiss (rainbow trout), making it an important pathogen within the Salmonidae family. This strain has been linked to significant health issues in these hosts, including septicemia and Enteric Red Mouth Syndrome (ERMS), also known as enteric red mouth disease. The bacterium's habitat primarily includes the gills of fish, where it can cause infections leading to severe disease manifestations. Yersinia ruckeri possesses a single replicon, which is characteristic of its genomic structure. The presence of this pathogen in aquatic environments poses a considerable risk to fish populations, as it can lead to high mortality rates among affected individuals. Understanding the ecological role of Yersinia ruckeri, particularly in relation to its impact on salmonid fish, is crucial for managing fish health in aquaculture and natural ecosystems. The disease caused by this bacterium not only affects the health of individual fish but can also have broader implications for fish populations and the aquatic food web. Effective management strategies are essential to mitigate the effects of ERMS and protect both wild and cultivated salmonid stocks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia ruckeri
Strainstrain NCTC10476

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia ruckeri strain NCTC10476
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataquatic habitats; gills
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Metazoa, Salmonidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia ruckeri strain NCTC10476 genome assembly, contig:

Gene Summary

Adenine Count

1034355 bp

Thymine Count

1034856 bp

Guanine Count

930745 bp

Cytosine Count

939685 bp

Genome Length

3939641 bp

Protein-coding Genes

3405 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate alpha-decarboxylaseNCTC10476_01421Not AvailablePositive1495300 - 149576417208.9
polysaccharide deacetylaseNCTC10476_01422Not AvailableNegative1495841 - 149714849284.9
abc transporterNCTC10476_01423Not AvailableNegative1497350 - 149812028286.7
abc transporter atp-binding proteinNCTC10476_01424Not AvailableNegative1498117 - 149904334306.7
carbonic anhydraseNCTC10476_01425Not AvailablePositive1499279 - 149993524499.5
hypoxanthine phosphoribosyltransferaseNCTC10476_01426Not AvailableNegative1500089 - 150062520182.4
multicopper oxidaseNCTC10476_01427Not AvailableNegative1500783 - 150240559086.6
putative chaperone lipoprotein yaccNCTC10476_01428Not AvailablePositive1502608 - 150295512955.5
spermidine synthaseNCTC10476_01429Not AvailablePositive1503067 - 150393032338.4
s-adenosylmethionine decarboxylaseNCTC10476_01430Not AvailablePositive1503959 - 150475330210.9

Displaying genes 1541 – 1550 of 3635 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da

Displaying 1–1 of 1 metabolites

Health Effects

Health ConditionRelationReference
Enteric red mouth syndromeCausesPMC11294328
ErmsCausesPMC11294328
SepticemiaCausesPMC11294328
Enteric red mouth diseaseCausesPMC7065874
Enteric redmouth diseaseCausesPMC7660898
Enteric redmouth diseaseCausesPMC9693156

Displaying health effects 1 – 6 of 6 in total