Yersinia ruckeri strain NCTC10476

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia ruckeri strain NCTC10476 is a rod-shaped bacterium that exhibits the presence of flagella, facilitating motility in aquatic habitats. It is notably associated with salmonid fish, particularly Oncorhynchus mykiss (rainbow trout), making it an important pathogen within the Salmonidae family. This strain has been linked to significant health issues in these hosts, including septicemia and Enteric Red Mouth Syndrome (ERMS), also known as enteric red mouth disease. The bacterium's habitat primarily includes the gills of fish, where it can cause infections leading to severe disease manifestations. Yersinia ruckeri possesses a single replicon, which is characteristic of its genomic structure. The presence of this pathogen in aquatic environments poses a considerable risk to fish populations, as it can lead to high mortality rates among affected individuals. Understanding the ecological role of Yersinia ruckeri, particularly in relation to its impact on salmonid fish, is crucial for managing fish health in aquaculture and natural ecosystems. The disease caused by this bacterium not only affects the health of individual fish but can also have broader implications for fish populations and the aquatic food web. Effective management strategies are essential to mitigate the effects of ERMS and protect both wild and cultivated salmonid stocks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia ruckeri
Strainstrain NCTC10476

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia ruckeri strain NCTC10476
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataquatic habitats; gills
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Metazoa, Salmonidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia ruckeri strain NCTC10476 genome assembly, contig:

Gene Summary

Adenine Count

1034355 bp

Thymine Count

1034856 bp

Guanine Count

930745 bp

Cytosine Count

939685 bp

Genome Length

3939641 bp

Protein-coding Genes

3405 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arylesteraseNCTC10476_01111Not AvailablePositive1177440 - 117803922286.2
short chain dehydrogenaseNCTC10476_01112Not AvailablePositive1178138 - 117891427931.0
putative thioredoxinNCTC10476_01113Not AvailablePositive1178995 - 117984931562.9
putative stomatin/prohibitin-family membrane protease subunit ybbkNCTC10476_01114Not AvailablePositive1180015 - 118092933532.0
putative activity regulator of membrane protease ybbkNCTC10476_01115Not AvailablePositive1180932 - 118138116692.5
putative regulatory proteinNCTC10476_01116Not AvailableNegative1181428 - 118186215936.0
copper exporting atpaseNCTC10476_01117Not AvailablePositive1182051 - 118478696333.9
putative ligaseNCTC10476_01118Not AvailablePositive1184879 - 118568530137.6
ybak family proteinNCTC10476_01120Not AvailablePositive1185990 - 118646917223.0
bifunctional udp-sugar hydrolase/5'-nucleotidase periplasmicNCTC10476_01121Not AvailableNegative1186577 - 118822960453.6

Displaying genes 1241 – 1250 of 3635 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da

Displaying 1–1 of 1 metabolites

Health Effects

Health ConditionRelationReference
Enteric red mouth syndromeCausesPMC11294328
ErmsCausesPMC11294328
SepticemiaCausesPMC11294328
Enteric red mouth diseaseCausesPMC7065874
Enteric redmouth diseaseCausesPMC7660898
Enteric redmouth diseaseCausesPMC9693156

Displaying health effects 1 – 6 of 6 in total