Pannonibacter phragmitetus strain NCTC13350

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Pannonibacter

Description

Pannonibacter phragmitetus strain NCTC13350 is a bacterial strain characterized by a single replicon, indicating a streamlined genetic structure. The genomic data for this strain is cataloged under the accession number UGSK00000000.1, which provides a reference for researchers interested in its genetic makeup and potential applications. As a member of the Pannonibacter genus, Pannonibacter phragmitetus is likely associated with specific ecological niches, particularly in wetland environments. This genus is known for its ability to thrive in diverse habitats, suggesting that Pannonibacter phragmitetus may play a role in the microbiomes of such ecosystems. The presence of a single replicon could imply a level of genetic stability, which may be advantageous for survival and adaptation in fluctuating environments typical of wetlands. Understanding the traits of Pannonibacter phragmitetus, particularly its single replicon, allows researchers to explore its potential contributions to microbial diversity and ecosystem functioning. Its ecological role could be significant in nutrient cycling and interactions with other microbial species, potentially influencing the overall health and dynamics of its habitat. Further studies on this strain may reveal insights into its specific functions and interactions within its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusPannonibacter
SpeciesPannonibacter phragmitetus
Strainstrain NCTC13350

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pannonibacter phragmitetus strain NCTC13350 genome assembly,

Gene Summary

Adenine Count

898565 bp

Thymine Count

886307 bp

Guanine Count

1522235 bp

Cytosine Count

1530380 bp

Genome Length

4837487 bp

Protein-coding Genes

4201 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein containing caspase domainNCTC13350_03598Not AvailablePositive4015755 - 401674134813.6
protein of uncharacterised function (duf2937)NCTC13350_03599Not AvailablePositive4016756 - 401727418380.2
putative gamma-glutamyltransferase ywrdNCTC13350_03600Not AvailablePositive4017295 - 401888455777.7
d-malate degradation protein rNCTC13350_03601Not AvailablePositive4018912 - 401982033966.8
leucine dehydrogenaseNCTC13350_03602Not AvailableNegative4020099 - 402118137307.5
nickel/cobalt efflux protein rcnaNCTC13350_03603Not AvailablePositive4021467 - 402332065379.0
gamma-glutamyl-gamma-aminobutyrate hydrolase puudNCTC13350_03604Not AvailableNegative4023338 - 402409626827.6
degradation activatorNCTC13350_03605Not AvailableNegative4024233 - 402532138904.5
minor outer membrane protein omp16NCTC13350_03606Not AvailableNegative4025470 - 402598818827.3
predicted permease, dmt superfamilyNCTC13350_03607Not AvailableNegative4026090 - 402699833132.5

Displaying genes 3571 – 3580 of 4278 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.