Escherichia coli strain NCTC8985

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NCTC8985 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, allowing it to thrive in varied oxygen environments. This strain is motile, possessing flagella, and typically exists in pairs or as single cells. As a mesophilic organism, its optimal growth temperature is around 37 degrees Celsius, which aligns with the body temperature of its various hosts. NCTC8985 is free-living and has a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and Bos taurus (cattle), among others. This broad host range extends to various classes of animals and even some plants, such as Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). This adaptability suggests ecological versatility and the potential for interaction with multiple ecosystems. In terms of health impacts, strain NCTC8985 is pathogenic to humans, associated with a variety of serious health conditions, including urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and septicemia. The strain's involvement in illnesses such as hemolytic uremic syndrome (HUS) and foodborne infections underscores its significance in clinical microbiology and public health. Given its pathogenic potential and ecological adaptability, E. coli strain NCTC8985 serves as a critical model for understanding bacterial pathogenicity, host interactions, and the implications of microbial ecology in both health and disease contexts. Its presence in multiple hosts reflects the complex relationships between bacteria and their environments, emphasizing the importance of monitoring such strains in both clinical and environmental settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain NCTC8985

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain NCTC8985
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NCTC8985 genome assembly, contig:

Gene Summary

Adenine Count

1215265 bp

Thymine Count

1216631 bp

Guanine Count

1251908 bp

Cytosine Count

1249317 bp

Genome Length

4933121 bp

Protein-coding Genes

6202 genes

Non-Coding Genes

346 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive3710511 - 3712039Not Available
Trna-ileNot AvailableNot AvailablePositive3712113 - 3712189Not Available
Trna-alaNot AvailableNot AvailablePositive3712232 - 3712308Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive3712485 - 3715387Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive3715484 - 3715598Not Available
Trna-thrNot AvailableNot AvailablePositive3715612 - 3715687Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive3715729 - 3715843Not Available
abc transporter atp-binding proteinNCTC8985_05016Not AvailableNegative3715905 - 371666328535.9
abc transporter permeaseNCTC8985_05017Not AvailableNegative3716671 - 371777441485.7
abc transporter permeaseNCTC8985_05018Not AvailableNegative3717784 - 371896543263.9

Displaying genes 4971 – 4980 of 6548 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total