Escherichia coli strain NCTC8621

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NCTC8621 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. This strain is motile, possessing flagella, and typically exists in cell arrangements of singles or pairs. It is mesophilic, with an optimal growth temperature of 37°C. NCTC8621 has a wide host range, being associated with various organisms including Homo sapiens, Gallus gallus, Bos taurus, and numerous other mammals, birds, and even some plants like Solanum lycopersicum and Brassica oleracea var. italica. It exhibits free-living biotic relationships, indicating its ability to survive independently in various environments. Clinically, NCTC8621 is notable for its pathogenicity in humans, being implicated in a multitude of health issues such as urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and even severe conditions like hemolytic uremic syndrome (HUS). The strain can cause significant health impacts including diarrhea, renal failure, and complications during pregnancy. The presence of E. coli strain NCTC8621 in diverse ecological niches, along with its association with various hosts, underscores its adaptability and potential role in both health and disease. This strain exemplifies the complex interactions within microbial communities and highlights the importance of monitoring pathogenic strains in clinical and environmental contexts to mitigate health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain NCTC8621

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain NCTC8621
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NCTC8621 genome assembly, contig:

Gene Summary

Adenine Count

1296697 bp

Thymine Count

1303842 bp

Guanine Count

1332519 bp

Cytosine Count

1318136 bp

Genome Length

5251194 bp

Protein-coding Genes

4468 genes

Non-Coding Genes

800 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Phage tail collar domain proteinNCTC8621_01231Not AvailableNegative1225019 - 122539612804.3
Tail fiber proteinNCTC8621_01232Not AvailableNegative1225389 - 122596420693.0
Tail fibers proteinNCTC8621_01233Not AvailableNegative1225961 - 122631413054.5
Tail fibers proteinNCTC8621_01234Not AvailableNegative1226277 - 122657011098.4
Baseplate assembly proteinNCTC8621_01235Not AvailableNegative1226567 - 122747232588.2
Baseplate assembly protein wNCTC8621_01236Not AvailableNegative1227479 - 122782612662.3
Baseplate assembly protein vNCTC8621_01237Not AvailableNegative1227823 - 122845822057.1
uncharacterised proteinNCTC8621_01238Not AvailablePositive1228596 - 122913820989.5
TransposaseNCTC8621_01239Not AvailableNegative1229707 - 123057633413.3
Tail completion proteinNCTC8621_01240Not AvailableNegative1230628 - 12308739276.22

Displaying genes 81 – 90 of 5268 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total