Escherichia coli strain NCTC9007

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NCTC9007 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic nature and mobility, facilitated by the presence of flagella. This strain typically exhibits a cell arrangement in pairs or singles and thrives optimally at 37°C, categorizing it as mesophilic. NCTC9007 is host-associated and is known to inhabit various organisms, including Homo sapiens, Gallus gallus, Bos taurus, and several other vertebrates and invertebrates, as well as plant species like Solanum lycopersicum and Brassica oleracea var. italica. This wide range of hosts indicates a versatile ecological role, contributing to its reputation as a free-living organism capable of colonizing diverse environments. The strain is associated with numerous health effects, particularly in humans, where it is implicated in urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The extensive list of health impacts includes various forms of diarrhea, peritonitis, and even complications such as renal failure and sepsis, emphasizing its pathogenic potential. The ecological insight provided by the host range and health effects of E. coli NCTC9007 demonstrates its adaptability and role in both commensal and pathogenic relationships in different biological contexts. This duality underscores the importance of monitoring such strains in both medical and environmental microbiology, as their presence can influence health outcomes in humans and other species alike.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain NCTC9007

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain NCTC9007
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NCTC9007 genome assembly, contig:

Gene Summary

Adenine Count

1337842 bp

Thymine Count

1331472 bp

Guanine Count

1322272 bp

Cytosine Count

1402761 bp

Genome Length

5394347 bp

Protein-coding Genes

4534 genes

Non-Coding Genes

702 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail componentNCTC9007_00083Not AvailableNegative72462 - 7304021560.0
Head-tail joining proteinNCTC9007_00084Not AvailableNegative73065 - 7340612296.2
Putative transposase orfbNCTC9007_00086Not AvailablePositive74134 - 7476024386.9
Dna packaging proteinNCTC9007_00087Not AvailableNegative74753 - 7507611546.5
Capsid componentNCTC9007_00088Not AvailableNegative75118 - 7588228213.4
Capsid componentNCTC9007_00089Not AvailableNegative75962 - 761446917.43
Head-dna stabilization proteinNCTC9007_00090Not AvailableNegative76200 - 7653211622.7
Capsid componentNCTC9007_00091Not AvailableNegative76542 - 7787346445.0
Capsid componentNCTC9007_00092Not AvailableNegative77854 - 7945559396.9
Head-tail joining proteinNCTC9007_00093Not AvailableNegative79452 - 796587613.19

Displaying genes 11 – 20 of 5236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total