Capnocytophaga granulosa strain NCTC12948

Rodfacultative aerobe/anaerobe / microaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Capnocytophaga

Description

Capnocytophaga granulosa strain NCTC12948 is a Gram-negative bacterium identified in the oral cavity, particularly in subgingival plaque and on the tongue-dorsum. This strain is characterized by its rod shape and the presence of flagella, which facilitates its mobility within its habitat. It exhibits a facultative aerobe/anaerobe or microaerophilic oxygen requirement, allowing it to thrive in varying oxygen conditions, typical of many oral environments. C. granulosa is notable for its association with Homo sapiens and other Metazoa, indicating its potential role in the microbiomes of these hosts. The bacterium is implicated in various health effects, ranging from minor wound infections to more severe conditions such as sepsis. This spectrum of pathogenic potential underscores its importance in clinical microbiology, particularly in cases involving immunocompromised individuals or those with oral health issues. With a single replicon, the genetic structure of C. granulosa strain NCTC12948 suggests a streamlined genomic organization, which may contribute to its adaptability and survival in diverse ecological niches within the oral cavity. The presence of this bacterium in dental plaque highlights its ecological role within the oral microbiome, where it may interact with other microbial species, contributing to oral health and disease dynamics. Understanding these interactions is essential for developing targeted therapeutic strategies in managing oral infections and systemic implications linked to oral microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCapnocytophaga
SpeciesCapnocytophaga granulosa
Strainstrain NCTC12948

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Capnocytophaga granulosa strain NCTC12948
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe / microaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatBM; oral cavity; plaque; subgingival plaque (SUBP); SUPP; SV; TD; tongue; tongue-dorsum
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Capnocytophaga granulosa strain NCTC12948 genome assembly, contig:

Gene Summary

Adenine Count

828597 bp

Thymine Count

834164 bp

Guanine Count

590053 bp

Cytosine Count

590983 bp

Genome Length

2843797 bp

Protein-coding Genes

2567 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
folylpolyglutamate synthaseNCTC12948_01311Not AvailableNegative1433279 - 143449344980.7
phosphopantetheine adenylyltransferaseNCTC12948_01312Not AvailableNegative1434493 - 143497218169.0
phosphoribosylglycinamide formyltransferaseNCTC12948_01313Not AvailablePositive1435080 - 143564621367.0
dinb superfamilyNCTC12948_01314Not AvailablePositive1435658 - 143612517883.5
ribosomal rna small subunit methyltransferase dNCTC12948_01315Not AvailableNegative1436178 - 143671720371.0
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)NCTC12948_01316Not AvailablePositive1436776 - 143735421602.3
azurinNCTC12948_01317Not AvailableNegative1437417 - 143793217988.6
probable hth-type transcriptional regulator ygavNCTC12948_01318Not AvailablePositive1438490 - 143888815159.3
redox-active disulfide protein 2NCTC12948_01319Not AvailablePositive1438966 - 14391998342.45
uncharacterised proteinNCTC12948_01320Not AvailablePositive1439209 - 143965216781.0

Displaying genes 1311 – 1320 of 2631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

266 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 266 metabolites

Health Effects

Health ConditionRelationReference
Various types of infections ranging from minor wound infections to sepsisCausesPMC4780008

Displaying health effects 1 – 1 of 1 in total