Escherichia coli strain VRES0683

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VRES0683 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. This strain is motile, equipped with flagella, and typically found in pairs or as single cells. It is mesophilic, with an optimal growth temperature of 37°C, which aligns with the average human body temperature, indicating its adaptation to host-associated environments. VRES0683 is known to inhabit a diverse range of hosts, including Homo sapiens, various livestock such as Bos taurus and Gallus gallus, as well as other animals and even plants like Solanum lycopersicum and Brassica oleracea var. italica. This broad host range suggests a high level of ecological adaptability and potential for transmission across different species. Clinically, this strain is associated with a multitude of health effects, particularly in humans. It is known to cause urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenicity emphasizes its role as a significant opportunistic pathogen, capable of leading to serious health complications, including septicemia and gastrointestinal diseases. Understanding the pathogenic potential of E. coli strain VRES0683 highlights the importance of monitoring and controlling its transmission within both human and animal populations. Its presence in various hosts points to its ecological versatility, making it a relevant target for public health initiatives aimed at reducing foodborne and zoonotic infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VRES0683

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VRES0683
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VRES0683 genome assembly, contig:

Gene Summary

Adenine Count

1440685 bp

Thymine Count

1427403 bp

Guanine Count

1470512 bp

Cytosine Count

1458442 bp

Genome Length

5800210 bp

Protein-coding Genes

5147 genes

Non-Coding Genes

443 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive3107441 - 3107452Not Available
Integrase proteinSAMEA3485113_03006Not AvailableNegative3107608 - 310863339213.0
Hypothetical proteinSAMEA3485113_03007Not AvailableNegative3108633 - 31088367676.3
Exodeoxyribonuclease viiiSAMEA3485113_03008Not AvailableNegative3108895 - 311134890413.3
Host killing proteinSAMEA3485113_03009Not AvailableNegative3111468 - 31116898394.12
putative prophage proteinSAMEA3485113_03012Not AvailableNegative3112734 - 31129528452.08
Prophage repressorSAMEA3485113_03013Not AvailableNegative3113228 - 311364716285.5
Prophage antirepressorSAMEA3485113_03014Not AvailablePositive3113749 - 311403010647.8
Putative cii repressorSAMEA3485113_03015Not AvailablePositive3114014 - 311443915987.4
Hypothetical proteinSAMEA3485113_03016Not AvailablePositive3114510 - 311552037773.9

Displaying genes 121 – 130 of 5590 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total