Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0374 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1347849 bp
Thymine Count
1349174 bp
Guanine Count
1357668 bp
Cytosine Count
1356575 bp
Genome Length
5412071 bp
Protein-coding Genes
4839 genes
Non-Coding Genes
458 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium uptake protein trkh | SAMEA3753097_03642 | Not Available | Positive | 3686518 - 3687969 | 52962.9 |
| protoporphyrinogen oxidase | SAMEA3753097_03643 | Not Available | Positive | 3687981 - 3688526 | 21257.5 |
| glutamate decarboxylase | SAMEA3753097_03644 | Not Available | Positive | 3688721 - 3689323 | 22478.9 |
| glutamate/gamma-aminobutyrate antiporter (extreme acid sensitivity protein) | SAMEA3753097_03645 | Not Available | Positive | 3689479 - 3691014 | 55080.0 |
| putative lipoprotein | SAMEA3753097_03646 | Not Available | Positive | 3691145 - 3692464 | 49547.8 |
| putative signal transduction protein | SAMEA3753097_03647 | Not Available | Positive | 3692841 - 3694223 | 53179.7 |
| heme-regulated cyclic amp phosphodiesterase (direct oxygen sensor protein) | SAMEA3753097_03648 | Not Available | Positive | 3694248 - 3696647 | 90249.6 |
| d-alanyl-d-alanine dipeptidase | SAMEA3753097_03649 | Not Available | Positive | 3696905 - 3697486 | 21214.2 |
| abc transporter substrate-binding protein | SAMEA3753097_03650 | Not Available | Positive | 3697500 - 3699050 | 57635.1 |
| abc transporter permease | SAMEA3753097_03651 | Not Available | Positive | 3699052 - 3700074 | 37441.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





