Escherichia coli strain VREC0385

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0385 is a Gram-negative, facultative anaerobic bacterium with a rod-shaped morphology. It is characterized by its mobility, facilitated by the presence of flagella, and it typically exists in pairs or singles. This strain thrives optimally at 37°C and falls within the mesophilic temperature range. E. coli VREC0385 is notable for its broad host spectrum, which includes a variety of species such as Homo sapiens, Gallus gallus, Bos taurus, and even diverse plant species like Solanum lycopersicum and Brassica oleracea var. italica. This indicates a complex ecological role, as it can inhabit multiple environments, both in animal hosts and associated with plants. The strain is associated with several health effects, primarily in humans, where it can cause urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like hemorrhagic colitis and hemolytic uremic syndrome (HUS). Additionally, it has implications in neonatal health, with associations to neonatal meningitis and early onset neonatal sepsis. Given its pathogenicity and ability to colonize a wide range of hosts, E. coli VREC0385 exemplifies the intricate dynamics of host-associated microbes in ecosystems. Its capacity to cause significant health issues underlines the importance of monitoring and understanding pathogenic strains within both human and veterinary contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0385

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0385
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0385 genome assembly, contig:

Gene Summary

Adenine Count

1422611 bp

Thymine Count

1426380 bp

Guanine Count

1445971 bp

Cytosine Count

1435503 bp

Genome Length

5731082 bp

Protein-coding Genes

5131 genes

Non-Coding Genes

460 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Cp4-57 prophageSAMEA3753064_00498Not AvailablePositive534482 - 53572646728.4
putative prophage regulatory proteinSAMEA3753064_00499Not AvailablePositive535981 - 5361727431.15
putative lcd-like protein from phage origin (c-term)SAMEA3753064_00502Not AvailablePositive536819 - 5370076973.28
putative prophage proteinSAMEA3753064_00503Not AvailablePositive537000 - 5371856684.2
putative prophage proteinSAMEA3753064_00504Not AvailablePositive537225 - 53751211185.5
Protein of unknown function duf927SAMEA3753064_00505Not AvailablePositive537509 - 53964478450.9
Single-stranded dna-binding proteinSAMEA3753064_00506Not AvailablePositive539881 - 54030615255.0
Prop proteinSAMEA3753064_00507Not AvailablePositive540342 - 54087820098.2
Perc transcriptional activator family proteinSAMEA3753064_00508Not AvailablePositive540875 - 54115910815.0
Pic serine protease precursorSAMEA3753064_00509Not AvailableNegative542554 - 54492383470.1

Displaying genes 51 – 60 of 5591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total