Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0385 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1422611 bp
Thymine Count
1426380 bp
Guanine Count
1445971 bp
Cytosine Count
1435503 bp
Genome Length
5731082 bp
Protein-coding Genes
5131 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alternative pyrimidine degradation pathway protein | SAMEA3753064_00872 | Not Available | Negative | 947357 - 948157 | 28927.8 |
| pyrimidine utilization protein c | SAMEA3753064_00873 | Not Available | Negative | 948165 - 948551 | 13775.6 |
| isochorismatase family protein ycdl | SAMEA3753064_00874 | Not Available | Negative | 948563 - 949258 | 25361.2 |
| monooxygenase ycdm | SAMEA3753064_00875 | Not Available | Negative | 949255 - 950346 | 39945.4 |
| transcriptional regulator ycdc | SAMEA3753064_00876 | Not Available | Positive | 950634 - 951272 | 23688.9 |
| trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | SAMEA3753064_00877 | Not Available | Negative | 951312 - 955274 | 143762.0 |
| sodium/proline symporter (proline permease) | SAMEA3753064_00878 | Not Available | Positive | 955695 - 957203 | 54347.3 |
| ferrous iron permease | SAMEA3753064_00879 | Not Available | Positive | 957746 - 958636 | 32990.0 |
| inactive ferrous ion transporter periplasmic protein efeo | SAMEA3753064_00880 | Not Available | Positive | 958633 - 959760 | 41124.8 |
| putative peroxidase | SAMEA3753064_00881 | Not Available | Positive | 959766 - 961037 | 46706.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





