Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxiredoxin (osmotically-inducible protein c) | SAMEA3472147_00636 | Not Available | Positive | 701659 - 702090 | 15089.0 |
| abc transporter atp-binding protein | SAMEA3472147_00637 | Not Available | Negative | 702146 - 703072 | 34668.2 |
| d-ala-d-ala transporter subunit ddpd | SAMEA3472147_00638 | Not Available | Negative | 703065 - 704051 | 36028.0 |
| abc transporter permease | SAMEA3472147_00639 | Not Available | Negative | 704048 - 704944 | 31942.9 |
| abc transporter permease | SAMEA3472147_00640 | Not Available | Negative | 704941 - 705963 | 37455.5 |
| abc transporter substrate-binding protein | SAMEA3472147_00641 | Not Available | Negative | 705965 - 707515 | 57659.2 |
| d-alanyl-d-alanine dipeptidase | SAMEA3472147_00642 | Not Available | Negative | 707529 - 708110 | 21228.2 |
| heme-regulated cyclic amp phosphodiesterase (direct oxygen sensor protein) | SAMEA3472147_00643 | Not Available | Negative | 708368 - 710767 | 90284.6 |
| putative signal transduction protein | SAMEA3472147_00644 | Not Available | Negative | 710792 - 712174 | 53212.8 |
| putative lipoprotein | SAMEA3472147_00645 | Not Available | Negative | 712551 - 713870 | 49575.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





