Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease | SAMEA3472147_04980 | Not Available | Negative | 5057314 - 5057889 | 21551.5 |
| uncharacterised protein | SAMEA3472147_04981 | Not Available | Negative | 5057902 - 5058057 | 6226.62 |
| uncharacterised protein | SAMEA3472147_04984 | Not Available | Negative | 5058852 - 5059091 | 9155.04 |
| regulatory phage protein cox | SAMEA3472147_04985 | Not Available | Negative | 5059178 - 5059657 | 18717.1 |
| repressor protein c (modular protein) from prophage | SAMEA3472147_04986 | Not Available | Positive | 5059761 - 5060084 | 11743.0 |
| putative integrase | SAMEA3472147_04987 | Not Available | Positive | 5060175 - 5060819 | 24786.1 |
| putative chaperone | SAMEA3472147_04996 | Not Available | Positive | 5067800 - 5068477 | 25450.8 |
| putative type 1 fimbriae anchoring protein fimd | SAMEA3472147_04997 | Not Available | Positive | 5068502 - 5071024 | 93709.0 |
| transposase | SAMEA3472147_04998 | Not Available | Positive | 5071066 - 5071431 | 13452.4 |
| is2 element protein | SAMEA3472147_04999 | Not Available | Positive | 5071389 - 5072294 | 34338.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





