Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3-diketo-l-gulonate trap transporter small permease yiam | SAMEA3472147_04331 | Not Available | Positive | 4477532 - 4477999 | 17284.7 |
| transporter | SAMEA3472147_04332 | Not Available | Positive | 4478002 - 4479279 | 45332.0 |
| 2,3-diketo-l-gulonate trap transporter, substrate-binding periplasmic protein | SAMEA3472147_04333 | Not Available | Positive | 4479292 - 4480278 | 36008.1 |
| l-xylulose/3-keto-l-gulonate kinase | SAMEA3472147_04334 | Not Available | Positive | 4480282 - 4481778 | 55158.1 |
| 3-keto-l-gulonate-6-phosphate decarboxylase | SAMEA3472147_04335 | Not Available | Positive | 4481775 - 4482437 | 23497.2 |
| l-xylulose 5-phosphate 3-epimerase | SAMEA3472147_04336 | Not Available | Positive | 4482430 - 4483290 | 32484.9 |
| l-ribulose-5-phosphate 4-epimerase | SAMEA3472147_04337 | Not Available | Positive | 4483284 - 4483979 | 25586.3 |
| arac family transcriptional regulator | SAMEA3472147_04338 | Not Available | Negative | 4484011 - 4484826 | 31535.1 |
| outer membrane porin protein | SAMEA3472147_04339 | Not Available | Positive | 4485368 - 4486117 | 28043.0 |
| putative gtp-binding protein | SAMEA3472147_04340 | Not Available | Negative | 4486162 - 4487670 | 54710.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





