Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid sos inhibition protein a | SAMEA3472147_04073 | Not Available | Negative | 4251916 - 4252635 | 27680.9 |
| plasmid sos inhibition protein b | SAMEA3472147_04074 | Not Available | Negative | 4252632 - 4252805 | 5962.22 |
| plasmid sos inhibition protein b | SAMEA3472147_04075 | Not Available | Negative | 4252822 - 4253082 | 8877.4 |
| parb-like nuclease | SAMEA3472147_04076 | Not Available | Negative | 4253151 - 4254482 | 48908.6 |
| protein of uncharacterised function (duf3304) | SAMEA3472147_04077 | Not Available | Positive | 4255074 - 4255538 | 17309.5 |
| putative type vi secretion protein | SAMEA3472147_04078 | Not Available | Positive | 4255523 - 4257616 | 78170.7 |
| h repeat-containing rhs element protein | SAMEA3472147_04079 | Not Available | Positive | 4257874 - 4258053 | 7284.02 |
| uncharacterised protein | SAMEA3472147_04080 | Not Available | Positive | 4258873 - 4259376 | 18897.4 |
| integrating conjugative element protein, family | SAMEA3472147_04081 | Not Available | Positive | 4259467 - 4259955 | 18079.3 |
| putative carbon-nitrogen hydrolase | SAMEA3472147_04082 | Not Available | Negative | 4260227 - 4260997 | 29072.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





