Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative type vi secretion protein | SAMEA3472147_04062 | Not Available | Negative | 4243080 - 4243502 | 16097.9 |
| putative type vi secretion protein | SAMEA3472147_04063 | Not Available | Negative | 4243512 - 4244012 | 18603.1 |
| putative type vi secretion protein | SAMEA3472147_04064 | Not Available | Negative | 4244034 - 4245512 | 55182.2 |
| putative type vi secretion protein | SAMEA3472147_04065 | Not Available | Negative | 4245515 - 4245991 | 17895.0 |
| periplasmic pilus chaperone cs3-1 | SAMEA3472147_04066 | Not Available | Negative | 4246361 - 4246729 | 13932.3 |
| putative transposase | SAMEA3472147_04067 | Not Available | Negative | 4247072 - 4247869 | 30546.3 |
| is21 family transposase | SAMEA3472147_04068 | Not Available | Negative | 4247869 - 4248510 | 24912.5 |
| is21 family transposase | SAMEA3472147_04069 | Not Available | Negative | 4248491 - 4248952 | 17920.8 |
| cysteine protease domain, yopt-type | SAMEA3472147_04070 | Not Available | Positive | 4249066 - 4249581 | 20072.2 |
| is1414, transposase | SAMEA3472147_04071 | Not Available | Positive | 4250119 - 4251327 | 45747.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





