Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-arabinose transporter atp-binding protein | SAMEA3472147_04042 | Not Available | Positive | 4218490 - 4219005 | 18675.6 |
| l-arabinose abc transporter, permease protein | SAMEA3472147_04043 | Not Available | Positive | 4219020 - 4220006 | 34243.1 |
| trehalose-6-phosphate phosphatase | SAMEA3472147_04044 | Not Available | Positive | 4220173 - 4220973 | 29234.0 |
| trehalose-6-phosphate synthase | SAMEA3472147_04045 | Not Available | Positive | 4220948 - 4222372 | 53531.0 |
| non-lee-encoded effector espj | SAMEA3472147_04046 | Not Available | Negative | 4223140 - 4223736 | 22702.6 |
| uncharacterised protein | SAMEA3472147_04047 | Not Available | Negative | 4223826 - 4224326 | 19581.6 |
| uncharacterised protein | SAMEA3472147_04048 | Not Available | Negative | 4224440 - 4224922 | 18656.7 |
| uncharacterised protein | SAMEA3472147_04049 | Not Available | Negative | 4225230 - 4225556 | 12517.4 |
| impa-related n-terminal family protein | SAMEA3472147_04050 | Not Available | Negative | 4225743 - 4226888 | 44110.4 |
| putative type vi secretion protein | SAMEA3472147_04051 | Not Available | Negative | 4227590 - 4230118 | 94172.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





