Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative type vi secretion system protein | SAMEA3472147_04012 | Not Available | Negative | 4182725 - 4183150 | 16086.8 |
| putative type vi secretion system protein | SAMEA3472147_04013 | Not Available | Negative | 4183155 - 4184639 | 55644.8 |
| putative type vi secretion system protein | SAMEA3472147_04014 | Not Available | Negative | 4184662 - 4185165 | 18424.2 |
| putative type vi secretion system protein | SAMEA3472147_04015 | Not Available | Positive | 4185868 - 4186386 | 19191.7 |
| uncharacterised protein | SAMEA3472147_04016 | Not Available | Positive | 4186472 - 4186591 | 4347.2 |
| type vi secretion system rhs/vgr-family protein | SAMEA3472147_04017 | Not Available | Positive | 4186607 - 4189006 | 88960.3 |
| putative zinc-dependent metallopeptidase | SAMEA3472147_04018 | Not Available | Positive | 4188993 - 4189796 | 30768.7 |
| uncharacterised protein | SAMEA3472147_04019 | Not Available | Negative | 4190204 - 4191166 | 37155.9 |
| putative type i methylase | SAMEA3472147_04020 | Not Available | Positive | 4191473 - 4193059 | 59626.5 |
| putative restriction-modification dna specificity domain protein | SAMEA3472147_04021 | Not Available | Positive | 4193056 - 4194213 | 43473.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





