Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferase | SAMEA3472147_03792 | Not Available | Negative | 3960416 - 3961387 | 37412.5 |
| putative peptidoglycan-binding peptidase | SAMEA3472147_03793 | Not Available | Negative | 3961507 - 3962829 | 49060.6 |
| high-affinity zinc transporter periplasmic protein | SAMEA3472147_03794 | Not Available | Negative | 3962845 - 3963831 | 35977.2 |
| high-affinity zinc transporter atpase | SAMEA3472147_03795 | Not Available | Positive | 3963856 - 3964611 | 27949.4 |
| high-affinity zinc uptake system membrane protein | SAMEA3472147_03796 | Not Available | Positive | 3964608 - 3965393 | 27778.5 |
| holliday junction atp-dependent dna helicase | SAMEA3472147_03797 | Not Available | Negative | 3965542 - 3966552 | 37176.0 |
| holliday junction atp-dependent dna helicase | SAMEA3472147_03798 | Not Available | Negative | 3966561 - 3967172 | 22117.1 |
| protein | SAMEA3472147_03799 | Not Available | Positive | 3967447 - 3968049 | 22826.3 |
| holliday junction resolvase | SAMEA3472147_03800 | Not Available | Negative | 3968051 - 3968572 | 18747.9 |
| yebc/pmpr family dna-binding regulatory protein | SAMEA3472147_03801 | Not Available | Negative | 3968607 - 3969347 | 26438.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





