Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative sugar-bisphosphate aldolase | SAMEA3472147_03688 | Not Available | Negative | 3842970 - 3843212 | 8680.61 |
| gntr family transcriptional regulator | SAMEA3472147_03689 | Not Available | Positive | 3843811 - 3844503 | 26077.5 |
| major facilitator superfamily protein | SAMEA3472147_03690 | Not Available | Positive | 3844526 - 3845941 | 51032.5 |
| ribose operon repressor | SAMEA3472147_03691 | Not Available | Negative | 3845919 - 3846911 | 36614.1 |
| ribokinase | SAMEA3472147_03692 | Not Available | Negative | 3846915 - 3847844 | 32322.4 |
| d-ribose transporter subunit rbsb | SAMEA3472147_03693 | Not Available | Negative | 3847970 - 3848860 | 30940.2 |
| high-affinity ribose transport system permease protein rbsc | SAMEA3472147_03694 | Not Available | Negative | 3848885 - 3849850 | 33454.0 |
| high affinity ribose transport atp-binding protein rbsa | SAMEA3472147_03695 | Not Available | Negative | 3849855 - 3851360 | 55045.0 |
| d-ribose high-affinity transporter | SAMEA3472147_03696 | Not Available | Negative | 3851368 - 3851787 | 15302.5 |
| kup system potassium uptake protein | SAMEA3472147_03697 | Not Available | Negative | 3851954 - 3853822 | 69298.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





