Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucarate dehydratase | SAMEA3472147_03303 | Not Available | Negative | 3429583 - 3430923 | 49143.9 |
| glucarate dehydratase | SAMEA3472147_03304 | Not Available | Negative | 3430944 - 3432284 | 48926.4 |
| glucarate transporter | SAMEA3472147_03305 | Not Available | Negative | 3432286 - 3433638 | 49145.0 |
| putative flavodoxin | SAMEA3472147_03306 | Not Available | Negative | 3434073 - 3434522 | 16275.1 |
| trna pseudouridine synthase c | SAMEA3472147_03307 | Not Available | Negative | 3434540 - 3435322 | 29667.5 |
| domain of uncharacterised function, duf446 | SAMEA3472147_03308 | Not Available | Negative | 3435322 - 3435651 | 12773.2 |
| putative secy-interacting protein | SAMEA3472147_03310 | Not Available | Negative | 3436273 - 3436818 | 20709.6 |
| nadph-dependent 7-cyano-7-deazaguanine reductase | SAMEA3472147_03311 | Not Available | Positive | 3436886 - 3437734 | 32573.2 |
| putative decarboxylase | SAMEA3472147_03312 | Not Available | Positive | 3437846 - 3439210 | 50975.0 |
| serine transporter | SAMEA3472147_03313 | Not Available | Positive | 3439767 - 3441056 | 46909.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





