Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilm | SAMEA3472147_02838 | Not Available | Negative | 2961344 - 2961781 | 16308.8 |
| toxin co-regulated pilus biosynthesis protein q | SAMEA3472147_02839 | Not Available | Negative | 2961785 - 2962855 | 38721.5 |
| plasmid conjugative transfer protein pili | SAMEA3472147_02840 | Not Available | Negative | 2963533 - 2963775 | 9157.18 |
| inner membrane protein yqik | SAMEA3472147_02841 | Not Available | Negative | 2963856 - 2965550 | 61808.4 |
| inner membrane protein yqij | SAMEA3472147_02842 | Not Available | Negative | 2965577 - 2966197 | 22314.8 |
| transfer protein c | SAMEA3472147_02843 | Not Available | Negative | 2966464 - 2967126 | 24866.8 |
| transcriptional activator rfah | SAMEA3472147_02844 | Not Available | Negative | 2967267 - 2967908 | 24629.9 |
| replication initiation protein | SAMEA3472147_02845 | Not Available | Positive | 2968564 - 2969640 | 42375.0 |
| cell division protein | SAMEA3472147_02846 | Not Available | Positive | 2970673 - 2971425 | 27948.6 |
| cellulose synthase catalytic subunit | SAMEA3472147_02847 | Not Available | Positive | 2971422 - 2974040 | 99772.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





