Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane channel protein | SAMEA3472147_02550 | Not Available | Positive | 2678613 - 2680094 | 53743.7 |
| putative inner membrane protein | SAMEA3472147_02551 | Not Available | Positive | 2680242 - 2680913 | 23461.6 |
| glutathionylspermidine synthase | SAMEA3472147_02552 | Not Available | Positive | 2680919 - 2682079 | 45028.4 |
| putative aromatic ring-opening dioxygenase | SAMEA3472147_02553 | Not Available | Negative | 2682117 - 2682932 | 29847.0 |
| zinc transporter zupt | SAMEA3472147_02554 | Not Available | Positive | 2683048 - 2683821 | 26486.5 |
| uncharacterised protein | SAMEA3472147_02555 | Not Available | Negative | 2683879 - 2684049 | 6810.31 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | SAMEA3472147_02556 | Not Available | Negative | 2684311 - 2684964 | 23354.9 |
| yqic protein | SAMEA3472147_02558 | Not Available | Positive | 2685339 - 2685638 | 11415.8 |
| glycogen synthesis protein glgs | SAMEA3472147_02559 | Not Available | Negative | 2685673 - 2685873 | 7922.34 |
| membrane protein yqij | SAMEA3472147_02560 | Not Available | Positive | 2686142 - 2686285 | 5214.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





