Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high-affinity choline transport protein (bcct-family transporter) | SAMEA3472147_02419 | Not Available | Positive | 2534824 - 2536206 | 50525.9 |
| high-affinity choline transport protein (bcct-family transporter) | SAMEA3472147_02420 | Not Available | Positive | 2536188 - 2536856 | 25720.1 |
| autotransporter | SAMEA3472147_02421 | Not Available | Positive | 2537430 - 2541413 | 140682.0 |
| putative signal transduction protein | SAMEA3472147_02422 | Not Available | Positive | 2541555 - 2542643 | 40606.3 |
| lysr family transcriptional regulator | SAMEA3472147_02423 | Not Available | Negative | 2542685 - 2543617 | 34768.9 |
| inner membrane protein | SAMEA3472147_02424 | Not Available | Negative | 2543709 - 2544206 | 17300.0 |
| ankyrin | SAMEA3472147_02425 | Not Available | Positive | 2544464 - 2545069 | 21713.4 |
| protein | SAMEA3472147_02426 | Not Available | Positive | 2545109 - 2545972 | 32348.6 |
| yahf/fdra-like protein | SAMEA3472147_02427 | Not Available | Positive | 2545962 - 2547509 | 55490.1 |
| putative cytoplasmic protein | SAMEA3472147_02428 | Not Available | Positive | 2547509 - 2548927 | 50421.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





