Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative 4-hydroxyphenylacetate permease hpax | SAMEA3472147_02091 | Not Available | Positive | 2216536 - 2217912 | 50585.6 |
| regulator of the 4hpa-hydroxylase operon | SAMEA3472147_02092 | Not Available | Positive | 2217922 - 2218812 | 34413.1 |
| 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | SAMEA3472147_02093 | Not Available | Positive | 2219063 - 2220625 | 58867.0 |
| 4-hydroxyphenylacetate 3-monooxygenase, reductase component | SAMEA3472147_02094 | Not Available | Positive | 2220643 - 2221155 | 18522.7 |
| putative carbon starvation protein | SAMEA3472147_02095 | Not Available | Positive | 2221548 - 2223698 | 77314.5 |
| yjix protein | SAMEA3472147_02096 | Not Available | Positive | 2223748 - 2223951 | 7729.24 |
| gtp-binding protein yjia | SAMEA3472147_02097 | Not Available | Positive | 2223962 - 2224918 | 35724.9 |
| uncharacterized protein conserved in bacteria | SAMEA3472147_02098 | Not Available | Negative | 2224952 - 2225254 | 11502.6 |
| protein of uncharacterised function (duf497) | SAMEA3472147_02099 | Not Available | Negative | 2225241 - 2225528 | 11157.3 |
| putative restriction endonuclease | SAMEA3472147_02100 | Not Available | Positive | 2225725 - 2226891 | 44277.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





