Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0307 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1290844 bp
Thymine Count
1292415 bp
Guanine Count
1324906 bp
Cytosine Count
1324109 bp
Genome Length
5233042 bp
Protein-coding Genes
4642 genes
Non-Coding Genes
368 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane porin hofq | SAMEA3472147_01040 | Not Available | Positive | 1117279 - 1118487 | 43596.4 |
| shikimate kinase i | SAMEA3472147_01041 | Not Available | Positive | 1118888 - 1119409 | 19539.2 |
| 3-dehydroquinate synthase | SAMEA3472147_01042 | Not Available | Positive | 1119466 - 1120554 | 38883.4 |
| damx protein | SAMEA3472147_01043 | Not Available | Positive | 1120646 - 1121932 | 46096.2 |
| dna adenine methylase | SAMEA3472147_01044 | Not Available | Positive | 1122039 - 1122875 | 32087.2 |
| ribulose-phosphate 3-epimerase | SAMEA3472147_01045 | Not Available | Positive | 1122893 - 1123570 | 24555.7 |
| phosphoglycolate phosphatase | SAMEA3472147_01046 | Not Available | Positive | 1123563 - 1124321 | 27348.7 |
| tryptophanyl-trna synthetase | SAMEA3472147_01047 | Not Available | Positive | 1124314 - 1125318 | 37439.9 |
| amino acid transporter | SAMEA3472147_01048 | Not Available | Positive | 1125587 - 1126492 | 33567.5 |
| prd domain protein,/aha_3910 family | SAMEA3472147_01049 | Not Available | Positive | 1126509 - 1126871 | 13528.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





