Escherichia coli strain VREC0386

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0386 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement typically found in pairs or singles. It is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments, and it possesses flagella, which enable mobility. This strain has an optimal growth temperature of 37°C and falls within the mesophilic temperature range. VREC0386 is notably free-living and has been isolated from a variety of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and many others across different taxonomic groups. These hosts include mammals, birds, and even plants like Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). Such a diverse range of hosts indicates its ecological versatility and potential for cross-species transmission. The health effects associated with strain VREC0386 are significant, as it is implicated in numerous diseases, including urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis. It can lead to severe conditions such as hemolytic uremic syndrome (HUS), peritonitis, and various forms of food poisoning. The strain's pathogenicity in humans highlights its role as a major concern in clinical microbiology and public health. Overall, the presence of E. coli strain VREC0386 in diverse hosts and its association with a wide array of health issues emphasize its ecological significance and the need for ongoing surveillance to mitigate potential outbreaks and health impacts on both human and animal populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0386

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0386
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0386 genome assembly, contig:

Gene Summary

Adenine Count

1420901 bp

Thymine Count

1429063 bp

Guanine Count

1451151 bp

Cytosine Count

1431767 bp

Genome Length

5733849 bp

Protein-coding Genes

5145 genes

Non-Coding Genes

448 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterised proteinSAMEA3753290_02557Not AvailablePositive2682683 - 26828566593.79
uncharacterised proteinSAMEA3753290_02558Not AvailablePositive2682981 - 268352020705.2
Hypothetical proteinSAMEA3753290_02559Not AvailablePositive2683790 - 268420314809.7
Hypothetical proteinSAMEA3753290_02560Not AvailablePositive2684614 - 268543231378.6
Hypothetical proteinSAMEA3753290_02561Not AvailablePositive2685524 - 268600918165.4
putative dna repair proteinSAMEA3753290_02562Not AvailablePositive2686025 - 268650117643.3
Hypothetical proteinSAMEA3753290_02563Not AvailablePositive2686570 - 26867918409.23
Hypothetical proteinSAMEA3753290_02564Not AvailablePositive2686810 - 268745725137.2
antitoxin of the yeev-yeeu toxin-antitoxin systemSAMEA3753290_02565Not AvailablePositive2687507 - 268787513800.4
toxin of the yeev-yeeu toxin-antitoxin systemSAMEA3753290_02566Not AvailablePositive2687964 - 268834113910.7

Displaying genes 51 – 60 of 5593 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total