Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0386 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1420901 bp
Thymine Count
1429063 bp
Guanine Count
1451151 bp
Cytosine Count
1431767 bp
Genome Length
5733849 bp
Protein-coding Genes
5145 genes
Non-Coding Genes
448 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ygdd | SAMEA3753290_02875 | Not Available | Negative | 3010921 - 3011316 | 14334.0 |
| putative transcriptional regulator of glycine cleavage system | SAMEA3753290_02876 | Not Available | Negative | 3011335 - 3012252 | 34403.4 |
| putative lipoprotein | SAMEA3753290_02878 | Not Available | Negative | 3012603 - 3012830 | 8174.67 |
| cysteine sulfinate desulfinase | SAMEA3753290_02879 | Not Available | Positive | 3013022 - 3014227 | 43278.6 |
| putative fe-s metabolism associated protein | SAMEA3753290_02880 | Not Available | Positive | 3014227 - 3014670 | 15913.1 |
| hesa/moeb/thif family protein | SAMEA3753290_02881 | Not Available | Negative | 3014721 - 3015527 | 28534.6 |
| membrane-bound lytic murein transglycosylase a | SAMEA3753290_02882 | Not Available | Negative | 3015766 - 3016863 | 40412.9 |
| Trna-met | Not Available | Not Available | Positive | 3017072 - 3017148 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3017182 - 3017258 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3017292 - 3017368 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





