Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0386 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1420901 bp
Thymine Count
1429063 bp
Guanine Count
1451151 bp
Cytosine Count
1431767 bp
Genome Length
5733849 bp
Protein-coding Genes
5145 genes
Non-Coding Genes
448 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane porin hofq | SAMEA3753290_02423 | Not Available | Positive | 2565316 - 2566485 | 42818.9 |
| shikimate kinase i | SAMEA3753290_02424 | Not Available | Positive | 2566924 - 2567445 | 19539.2 |
| 3-dehydroquinate synthase | SAMEA3753290_02425 | Not Available | Positive | 2567502 - 2568590 | 38856.3 |
| damx protein | SAMEA3753290_02426 | Not Available | Positive | 2568682 - 2569968 | 46148.3 |
| dna adenine methylase | SAMEA3753290_02427 | Not Available | Positive | 2570075 - 2570911 | 32087.2 |
| ribulose-phosphate 3-epimerase | SAMEA3753290_02428 | Not Available | Positive | 2570929 - 2571606 | 24555.7 |
| phosphoglycolate phosphatase | SAMEA3753290_02429 | Not Available | Positive | 2571599 - 2572357 | 27434.8 |
| tryptophanyl-trna synthetase | SAMEA3753290_02430 | Not Available | Positive | 2572350 - 2573354 | 37468.0 |
| amino acid transporter | SAMEA3753290_02431 | Not Available | Positive | 2573623 - 2574528 | 33479.4 |
| prd domain protein,/aha_3910 family | SAMEA3753290_02432 | Not Available | Positive | 2574545 - 2574907 | 13528.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





